TSS: Rfhg 51438.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_014220) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3499237,EH38E2247169) | |ccre_description=PLS,CTCF-bound (EH38D3499237,EH38E2247169) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_014220) | ||
|distance=-10 | |distance=-10 | ||
|distance_to_tss=- | |distance_to_tss=-49 | ||
|end=149377732 | |end=149377732 | ||
|entrez_id= | |entrez_id=100874091 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=TM4SF1 antisense RNA 1 | ||
|gene_id=4071 | |gene_id=4071 | ||
|gene_name= | |gene_name=TM4SF1-AS1 | ||
|gene_source=HGNC:11853 | |gene_source=HGNC:11853 | ||
|gene_symbol=TM4SF1 | |gene_symbol=TM4SF1 | ||
|gene_synonyms=L6 | |gene_synonyms=L6 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:11853 | |hgnc_mgi_id=HGNC:11853 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000240541 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_109809 | ||
|nearest_refseq= | |nearest_refseq=NR_046650 | ||
|nearest_unigene= | |nearest_unigene=Hs.549633 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=149377727 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:27, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3499237,EH38E2247169) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -49 |
|---|---|
| Nearest PromoterID: | NR_109809 |
| Entrez ID: | 100874091 |
| Nearest Unigene: | Hs.549633 |
| Nearest Refseq: | NR_046650 |
| Nearest Ensembl: | ENSG00000240541 |
| Gene Name: | TM4SF1-AS1 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.