TSS: Rfhg 52340.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_002268, intron 1 of 16) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3508587,EH38E2253526) | |ccre_description=pELS,CTCF-bound (EH38D3508587,EH38E2253526) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.071429 | |cpg_percent=0.071429 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=300 | |distance=300 | ||
|distance_to_tss= | |distance_to_tss=431 | ||
|end=160565147 | |end=160565147 | ||
|entrez_id= | |entrez_id=3840 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.533333 | |gc_percent=0.533333 | ||
|gene_alias= | |gene_alias=IPOA3{{!}}QIP1{{!}}SRP3 | ||
|gene_description= | |gene_description=karyopherin subunit alpha 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=KPNA4 | ||
|gene_source=HGNC:28057 | |gene_source=HGNC:28057 | ||
|gene_symbol=KRT8P12 | |gene_symbol=KRT8P12 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28057 | |hgnc_mgi_id=HGNC:28057 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000186432 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002268 | ||
|nearest_refseq= | |nearest_refseq=NM_002268 | ||
|nearest_unigene= | |nearest_unigene=Hs.467866 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=160565133 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 16:44, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3508587,EH38E2253526) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 431 |
|---|---|
| Nearest PromoterID: | NM_002268 |
| Entrez ID: | 3840 |
| Nearest Unigene: | Hs.467866 |
| Nearest Refseq: | NM_002268 |
| Nearest Ensembl: | ENSG00000186432 |
| Gene Name: | KPNA4 |
| Gene Alias: | IPOA3|QIP1|SRP3 |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.533333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.