TSS: Rfhg 53133.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000420517.6, exon 1 of 6) |ccre_category=PLS |ccre_description=PLS (EH38D3521415,EH38E2261377) |chr=chr3 |cpg_percent=0.034483 |detailed_...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (NM_181361) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D3521415,EH38E2261377) | |ccre_description=PLS (EH38D3521415,EH38E2261377) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.034483 | |cpg_percent=0.034483 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_181361) | ||
|distance=-16 | |distance=-16 | ||
|distance_to_tss= | |distance_to_tss=30 | ||
|end=178536481 | |end=178536481 | ||
|entrez_id= | |entrez_id=10242 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=potassium calcium-activated channel subfamily M regulatory beta subunit 2 | ||
|gene_id=10242 | |gene_id=10242 | ||
|gene_name= | |gene_name=KCNMB2 | ||
|gene_source=HGNC:6286 HGNC:6287 | |gene_source=HGNC:6286 HGNC:6287 | ||
|gene_symbol=KCNMB2 KCNMB3 | |gene_symbol=KCNMB2 KCNMB3 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:6286 HGNC:6287 | |hgnc_mgi_id=HGNC:6286 HGNC:6287 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000197584 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_181361 | ||
|nearest_refseq= | |nearest_refseq=NM_005832 | ||
|nearest_unigene= | |nearest_unigene=Hs.478368 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=178536452 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 16:57, 24 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3521415,EH38E2261377) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 30 |
|---|---|
| Nearest PromoterID: | NM_181361 |
| Entrez ID: | 10242 |
| Nearest Unigene: | Hs.478368 |
| Nearest Refseq: | NM_005832 |
| Nearest Ensembl: | ENSG00000197584 |
| Gene Name: | KCNMB2 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.034483 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.