TSS: Hg 100363.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-127913 |entrez_id=203228 |gc_percent=0.457711 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open rea...") |
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{{TSSDetail | {{TSSDetail | ||
|DENNL72= | |||
|FTDALS= | |||
|FTDALS1= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=-127913 | |distance_to_tss=-127913 | ||
|end=27701789 | |||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
|num_trans=0 | |||
|species=human | |||
|start=27701768 | |||
|strand=- | |||
|tata_box="77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00)" | |tata_box="77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100363.1 | |tss_id=hg_100363.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -127913 |
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| Nearest PromoterID: | NM_001256054 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | C9orf72 |
| Gene Alias: | ALSFTD |
| Gene Description: | chromosome 9 open reading frame 72 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00)" |