TSS: Rfhg 56721.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_015874) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3560758,EH38E2287825) | |ccre_description=PLS,CTCF-bound (EH38D3560758,EH38E2287825) | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.052632 | |cpg_percent=0.052632 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_015874) | ||
|distance=-4 | |distance=-4 | ||
|distance_to_tss=- | |distance_to_tss=-46 | ||
|end=26320771 | |end=26320771 | ||
|entrez_id= | |entrez_id=3516 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.650000 | |gc_percent=0.650000 | ||
|gene_alias= | |gene_alias=AOS3{{!}}CBF1{{!}}IGKJRB{{!}}IGKJRB1{{!}}KBF2{{!}}RBP-J{{!}}RBPJK{{!}}RBPSUH{{!}}SUH{{!}}csl | ||
|gene_description= | |gene_description=recombination signal binding protein for immunoglobulin kappa J region | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RBPJ | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000168214 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015874 | ||
|nearest_refseq= | |nearest_refseq=NM_005349 | ||
|nearest_unigene= | |nearest_unigene=Hs.479396 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=26320752 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 17:59, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3560758,EH38E2287825) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -46 |
|---|---|
| Nearest PromoterID: | NM_015874 |
| Entrez ID: | 3516 |
| Nearest Unigene: | Hs.479396 |
| Nearest Refseq: | NM_005349 |
| Nearest Ensembl: | ENSG00000168214 |
| Gene Name: | RBPJ |
| Gene Alias: | AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl |
| Gene Type: | protein-coding |
| CpG%: | 0.052632 |
| GC%: | 0.650000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |