TSS: Hg 100379.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-343022 |entrez_id=101929620 |gc_percent=0.482587 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1243 |g...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance= | |||
|distance_to_tss=-343022 | |distance_to_tss=-343022 | ||
|end=31724516 | |||
|entrez_id=101929620 | |entrez_id=101929620 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_135134 | |nearest_refseq=NR_135134 | ||
|nearest_unigene=Hs.547175 | |nearest_unigene=Hs.547175 | ||
|num_trans=0 | |||
|species=human | |||
|start=31724508 | |||
|strand=- | |||
|tata_box="-36(GGTTTTATAAGG,-,0.00)" | |tata_box="-36(GGTTTTATAAGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100379.1 | |tss_id=hg_100379.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -343022 |
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| Nearest PromoterID: | NR_135134 |
| Entrez ID: | 101929620 |
| Nearest Unigene: | Hs.547175 |
| Nearest Refseq: | NR_135134 |
| Nearest Ensembl: | ENSG00000260720 |
| Gene Name: | LINC01243 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1243 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(GGTTTTATAAGG,-,0.00)" |