TSS: Hg 100400.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-67944 |entrez_id=138474 |gc_percent=0.562189 |gene_alias=TAF(II)210|TAF2A2 |gene_description=TATA-box binding protein associate...") |
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{{TSSDetail | {{TSSDetail | ||
|TAF2A2= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=-67944 | |distance_to_tss=-67944 | ||
|end=32703617 | |||
|entrez_id=138474 | |entrez_id=138474 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_153809 | |nearest_refseq=NM_153809 | ||
|nearest_unigene=Hs.591086 | |nearest_unigene=Hs.591086 | ||
|num_trans=0 | |||
|species=human | |||
|start=32703609 | |||
|strand=- | |||
|tata_box="-32(TTCTTGAAAAGG,-,0.00)" | |tata_box="-32(TTCTTGAAAAGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100400.1 | |tss_id=hg_100400.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:08, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -67944 |
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| Nearest PromoterID: | NM_153809 |
| Entrez ID: | 138474 |
| Nearest Unigene: | Hs.591086 |
| Nearest Refseq: | NM_153809 |
| Nearest Ensembl: | ENSG00000122728 |
| Gene Name: | TAF1L |
| Gene Alias: | TAF(II)210 |
| Gene Description: | TATA-box binding protein associated factor 1 like |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(TTCTTGAAAAGG,-,0.00)" |