TSS: Rfhg 61970.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
|ccre_description=DNase-H3K4me3,CTCF-bound (EH38D3625779,EH38E2326512) | |ccre_description=DNase-H3K4me3,CTCF-bound (EH38D3625779,EH38E2326512) | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.050000 | |cpg_percent=0.050000 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-280583 | ||
|end=127352384 | |end=127352384 | ||
|entrez_id= | |entrez_id=27152 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.619048 | |gc_percent=0.619048 | ||
|gene_alias= | |gene_alias=CPLANE4{{!}}INT{{!}}OFD17{{!}}PDZD6{{!}}PDZK6{{!}}SRTD20 | ||
|gene_description= | |gene_description=inturned planar cell polarity protein | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=INTU | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000164066 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015693 | ||
|nearest_refseq= | |nearest_refseq=NM_015693 | ||
|nearest_unigene= | |nearest_unigene=Hs.391481 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=127352364 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 19:33, 24 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3,CTCF-bound (EH38D3625779,EH38E2326512) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -280583 |
|---|---|
| Nearest PromoterID: | NM_015693 |
| Entrez ID: | 27152 |
| Nearest Unigene: | Hs.391481 |
| Nearest Refseq: | NM_015693 |
| Nearest Ensembl: | ENSG00000164066 |
| Gene Name: | INTU |
| Gene Alias: | CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 |
| Gene Type: | protein-coding |
| CpG%: | 0.050000 |
| GC%: | 0.619048 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |