TSS: Hg 100494.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=45646 |entrez_id=51271 |gc_percent=0.437811 |gene_alias=NAG20|UAP|UBAP|UBAP-1 |gene_description=ubiquitin associated protein 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
|UAP= | |||
|UBAP= | |||
|UBAP-1= | |||
|all_trans=ENST00000372214.3:23 | |||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=23 | |||
|distance_to_tss=45646 | |distance_to_tss=45646 | ||
|end=34224652 | |||
|entrez_id=51271 | |entrez_id=51271 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_016525 | |nearest_refseq=NM_016525 | ||
|nearest_unigene=Hs.268963 | |nearest_unigene=Hs.268963 | ||
|num_trans=1 | |||
|species=human | |||
|start=34224650 | |||
|strand=- | |||
|tata_box="-20(TACTCTAAAAAC,-,0.00)" | |tata_box="-20(TACTCTAAAAAC,-,0.00)" | ||
|transcript_name=ENST00000372214.3 | |||
|tss_classification=no | |||
|tss_id=hg_100494.1 | |tss_id=hg_100494.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 45646 |
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| Nearest PromoterID: | NM_001171203 |
| Entrez ID: | 51271 |
| Nearest Unigene: | Hs.268963 |
| Nearest Refseq: | NM_016525 |
| Nearest Ensembl: | ENSG00000165006 |
| Gene Name: | UBAP1 |
| Gene Alias: | NAG20 |
| Gene Description: | ubiquitin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-20(TACTCTAAAAAC,-,0.00)" |