TSS: Hg 100511.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=207 |entrez_id=203259 |gc_percent=0.810945 |gene_alias=C9orf25 |gene_description=family with sequence similarity 219 member A |...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ895817:96 ENST00000379089.5:-186 ENST00000379087.5:-186 ENST00000379084.5:-186 ENST00000379081.5:-186 ENST00000379080.5:-186 ENST00000422409.5:-186 ENST00000379078.1:-186 uc064srz.1:-186 uc064ssa.1:-186 uc064ssb.1:-186 uc064ssc.1:-186 uc064ssd.1:-186 uc064sse.1:-186 uc064ssf.1:-186 AK299882:-199 ENST00000445726.5:-204 ENST00000297620.8:-204 NM_001184945:-204 NM_001184943:-204 NM_147202:-204 NM_001184942:-204 NM_001184941:-204 NM_001184940:-204 uc011lok.3:-204 uc003zuj.4:-204 AK123887:-204 BC041009:-204 AK096350:-204 AK294054:-204 | |||
|chr=chr9 | |||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=96 | |||
|distance_to_tss=207 | |distance_to_tss=207 | ||
|end=34458366 | |||
|entrez_id=203259 | |entrez_id=203259 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_147202 | |nearest_refseq=NM_147202 | ||
|nearest_unigene=Hs.493771 | |nearest_unigene=Hs.493771 | ||
|num_trans=30 | |||
|species=human | |||
|start=34458359 | |||
|strand=- | |||
|transcript_name=KJ895817 | |||
|tss_classification=yes | |||
|tss_id=hg_100511.1 | |tss_id=hg_100511.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 207 |
|---|---|
| Nearest PromoterID: | NM_147202 |
| Entrez ID: | 203259 |
| Nearest Unigene: | Hs.493771 |
| Nearest Refseq: | NM_147202 |
| Nearest Ensembl: | ENSG00000164970 |
| Gene Name: | FAM219A |
| Gene Alias: | C9orf25 |
| Gene Description: | family with sequence similarity 219 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |