TSS: Rfhg 72005.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000485457.1)
|annotation=promoter-TSS (NM_052971)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D3760110,EH38E2408922)
|ccre_description=pELS,CTCF-bound (EH38D3760110,EH38E2408922)
|chr=chr5
|chr=chr5
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000485457.1)
|detailed_annotation=promoter-TSS (NM_052971)
|distance=0
|distance=0
|distance_to_tss=2
|distance_to_tss=0
|end=132873674
|end=132873674
|entrez_id=ENSG00000164406
|entrez_id=116842
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.615385
|gc_percent=0.615385
|gene_alias=
|gene_alias=LEAP-2
|gene_description=
|gene_description=liver enriched antimicrobial peptide 2
|gene_id=116842
|gene_id=116842
|gene_name=liver enriched antimicrobial peptide 2
|gene_name=LEAP2
|gene_source=HGNC:29571
|gene_source=HGNC:29571
|gene_symbol=LEAP2
|gene_symbol=LEAP2
|gene_synonyms=LEAP-2
|gene_synonyms=LEAP-2
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:29571
|hgnc_mgi_id=HGNC:29571
|nearest_ensembl=
|nearest_ensembl=ENSG00000164406
|nearest_promoter_id=ENST00000485457.1
|nearest_promoter_id=NM_052971
|nearest_refseq=
|nearest_refseq=NM_052971
|nearest_unigene=ENST00000485457
|nearest_unigene=Hs.337588
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=132873661
|start=132873662
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 22:28, 24 June 2023

Basic information about the TSS

TSS ID:rfhg_72005.1
Species:human
Chr:chr5
Start:132873662
End:132873674
Strand:+
Source datasets
Protocol
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3760110,EH38E2408922)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000485457.1:0
ENST00000296877.3:0
AJ306405:0
AY052782:0
BC070199:0
GeneID:116842
HGNC/MGI_ID:HGNC:29571
UniProt_ID:Q7Z5F5 Q969E1
Nearer transcript ids and distances:
    Gene_name:LEAP2
    Gene_symbol:LEAP2
    Gene_synonyms:LEAP-2
    Gene_source:HGNC:29571



    TATA-Box annotation

    Distance to TSS:0
    Nearest PromoterID:NM_052971
    Entrez ID:116842
    Nearest Unigene:Hs.337588
    Nearest Refseq:NM_052971
    Nearest Ensembl:ENSG00000164406
    Gene Name:LEAP2
    Gene Alias:LEAP-2
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.615385
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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