TSS: Hg 100543.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=30 |entrez_id=730098 |gc_percent=0.641791 |gene_alias=- |gene_description=uncharacterized LOC730098 |gene_name=LOC730098 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000564224.1:0 ENST00000421828.6:0 ENST00000416454.5:0 ENST00000544078.2:0 NM_001320037:0 NM_001320038:0 NR_135148:0 uc064suo.1:0 uc064sup.1:0 uc064sur.1:0 uc064sut.1:0 BC037171:0 AK296005:0 BC066358:0 ENST00000423809.5:-46 uc064sus.1:-46 ENST00000555007.1:492 uc064suq.1:492 | |||
|chr=chr9 | |||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=0 | |||
|distance_to_tss=30 | |distance_to_tss=30 | ||
|end=34666066 | |||
|entrez_id=730098 | |entrez_id=730098 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC730098 | |gene_description=uncharacterized LOC730098 | ||
|gene_name= | |gene_id=10850 | ||
|gene_name=C-C motif chemokine ligand 27 | |||
|gene_source=HGNC:10626 | |||
|gene_symbol=CCL27 | |||
|gene_synonyms=ALP CTACK CTAK ESkine ILC PESKY skinkine | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:10626 | |||
|nearest_ensembl=ENSG00000187186 | |nearest_ensembl=ENSG00000187186 | ||
|nearest_promoter_id=NM_001320037 | |nearest_promoter_id=NM_001320037 | ||
|nearest_refseq=NM_001320037 | |nearest_refseq=NM_001320037 | ||
|nearest_unigene=Hs.459590 | |nearest_unigene=Hs.459590 | ||
|num_trans=18 | |||
|species=human | |||
|start=34665986 | |||
|strand=- | |||
|transcript_name=ENST00000564224.1 ENST00000421828.6 ENST00000416454.5 ENST00000544078.2 NM_001320037 NM_001320038 NR_135148 uc064suo.1 uc064sup.1 uc064sur.1 uc064sut.1 BC037171 AK296005 BC066358 | |||
|tss_classification=yes | |||
|tss_id=hg_100543.1 | |tss_id=hg_100543.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 30 |
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| Nearest PromoterID: | NM_001320037 |
| Entrez ID: | 730098 |
| Nearest Unigene: | Hs.459590 |
| Nearest Refseq: | NM_001320037 |
| Nearest Ensembl: | ENSG00000187186 |
| Gene Name: | C-C motif chemokine ligand 27 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC730098 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.