TSS: Hg 100599.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=331 |entrez_id=27240 |gc_percent=0.646766 |gene_alias=SIT|SIT-R |gene_description=signaling threshold regulating transmembrane a...") |
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{{TSSDetail | {{TSSDetail | ||
|SIT-R= | |||
|all_trans=AK093793:-41 ENST00000486859.5:106 uc064sxp.1:106 AB527705:-194 ENST00000474403.1:-248 uc064sxq.1:-248 AK314758:-269 ENST00000259608.7:-278 uc003zxe.3:-278 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 NM_014450:-288 uc064sxo.1:-288 | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-41 | |||
|distance_to_tss=331 | |distance_to_tss=331 | ||
|end=35650662 | |||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
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|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
|num_trans=17 | |||
|species=human | |||
|start=35650575 | |||
|strand=- | |||
|tata_box="19(CCTCTTAGGGGC,+,0.00)" | |tata_box="19(CCTCTTAGGGGC,+,0.00)" | ||
|transcript_name=AK093793 | |||
|tss_classification=yes | |||
|tss_id=hg_100599.1 | |tss_id=hg_100599.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 17:12, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 331 |
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Nearest PromoterID: | NM_014450 |
Entrez ID: | 27240 |
Nearest Unigene: | Hs.88012 |
Nearest Refseq: | NM_014450 |
Nearest Ensembl: | ENSG00000137078 |
Gene Name: | SIT1 |
Gene Alias: | SIT |
Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
Gene Type: | protein-coding |
CpG%: | 0.02 |
GC%: | 0.646766 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(CCTCTTAGGGGC,+,0.00)" |