TSS: Rfhg 80461.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EH38D3830969,EH38E2458966) |chr=chr6 |cpg_percent=0.000000 |detailed_annotation=Intergenic |di...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (NR_026816) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D3830969,EH38E2458966) | |ccre_description=dELS (EH38D3830969,EH38E2458966) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_026816) | ||
|distance=78 | |distance=78 | ||
|distance_to_tss=- | |distance_to_tss=-84 | ||
|end=31186408 | |end=31186408 | ||
|entrez_id= | |entrez_id=100130889 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
|gene_alias= | |gene_alias=NCRNA00196 | ||
|gene_description= | |gene_description=psoriasis susceptibility 1 candidate 3 | ||
|gene_id=100130889 | |gene_id=100130889 | ||
|gene_name= | |gene_name=PSORS1C3 | ||
|gene_source=HGNC:17203 | |gene_source=HGNC:17203 | ||
|gene_symbol=PSORS1C3 | |gene_symbol=PSORS1C3 | ||
|gene_synonyms=NCRNA00196 | |gene_synonyms=NCRNA00196 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:17203 | |hgnc_mgi_id=HGNC:17203 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_152836 | ||
|nearest_refseq= | |nearest_refseq=NM_001134284 | ||
|nearest_unigene= | |nearest_unigene=Hs.670091 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=31186395 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 00:52, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3830969,EH38E2458966) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -84 |
|---|---|
| Nearest PromoterID: | NR_152836 |
| Entrez ID: | 100130889 |
| Nearest Unigene: | Hs.670091 |
| Nearest Refseq: | NM_001134284 |
| Nearest Ensembl: | |
| Gene Name: | PSORS1C3 |
| Gene Alias: | NCRNA00196 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.