TSS: Rfhg 8139.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000354431.8)
|annotation=promoter-TSS (NM_001199328)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2183506,EH38E1359223)
|ccre_description=PLS,CTCF-bound (EH38D2183506,EH38E1359223)
|chr=chr1
|chr=chr1
|cpg_percent=0.090909
|cpg_percent=0.090909
|detailed_annotation=protein_coding-promoter-TSS (ENST00000354431.8)
|detailed_annotation=promoter-TSS (NM_001199328)
|distance=0
|distance=0
|distance_to_tss=0
|distance_to_tss=44
|end=74198300
|end=74198300
|entrez_id=ENSG00000259030
|entrez_id=100526835
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.719101
|gc_percent=0.719101
|gene_alias=
|gene_alias=CARK{{!}}TNNI3K
|gene_description=
|gene_description=FPGT-TNNI3K readthrough
|gene_id=100526835 8790
|gene_id=100526835 8790
|gene_name=FPGT-TNNI3K readthrough; fucose-1-phosphate guanylyltransferase
|gene_name=FPGT-TNNI3K
|gene_source=HGNC:3825 HGNC:42952
|gene_source=HGNC:3825 HGNC:42952
|gene_symbol=FPGT FPGT-TNNI3K
|gene_symbol=FPGT FPGT-TNNI3K
|gene_synonyms=GFPP
|gene_synonyms=GFPP
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:3825 HGNC:42952
|hgnc_mgi_id=HGNC:3825 HGNC:42952
|nearest_ensembl=
|nearest_ensembl=ENSG00000259030
|nearest_promoter_id=ENST00000648585.1
|nearest_promoter_id=NM_001199327
|nearest_refseq=
|nearest_refseq=NM_001112808
|nearest_unigene=ENST00000533006
|nearest_unigene=Hs.480085
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=74198211
|start=74198212
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 01:10, 25 June 2023

Basic information about the TSS

TSS ID:rfhg_8139.1
TSS ID(Version3):hg_3506.1
Species:human
Chr:chr1
Start:74198212
End:74198300
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2183506,EH38E1359223)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000557284.7:0
ENST00000467578.7:0
ENST00000524915.5:0
ENST00000370894.9:0
ENST00000370899.7:0
ENST00000482102.2:0
ENST00000370898.9:0
ENST00000370895.5:0
ENST00000529485.5:0
ENST00000534632.5:0
ENST00000533006.1:0
ENST00000648585.1:0
ENST00000370893.1:0
ENST00000534056.5:0
BC020720:0
AK294948:0
AF017445:0
AK304490:0
BC032865:0
AK223254:0
BC032308:0
AB208941:0
BX640903:0
AK299468:0
KU178439:0
KU178440:0
KU178441:0
GeneID:100526835 8790
HGNC/MGI_ID:HGNC:3825 HGNC:42952
UniProt_ID:A0A0S2Z4P4 A0A0S2Z4Z3 A0A0S2Z5C6 A0A3B3ITB1 A0PJA8 A6NHC7 B4DH62 E9PK10 E9PKE1 E9PMK0 E9PMM4 O14772 Q53FM8 V9GXZ4
Nearer transcript ids and distances:
    Gene_name:FPGT-TNNI3K
    Gene_symbol:FPGT FPGT-TNNI3K
    Gene_synonyms:GFPP
    Gene_source:HGNC:3825 HGNC:42952



    TATA-Box annotation

    Distance to TSS:44
    Nearest PromoterID:NM_001199327
    Entrez ID:100526835
    Nearest Unigene:Hs.480085
    Nearest Refseq:NM_001112808
    Nearest Ensembl:ENSG00000259030
    Gene Name:FPGT-TNNI3K
    Gene Alias:CARK|TNNI3K
    Gene Type:protein-coding
    CpG%:0.090909
    GC%:0.719101
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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