TSS: Rfhg 81401.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000470997.1, intron 1 of 4) |ccre_category=dELS |ccre_description=dELS (EH38D3832838,EH38E2460384) |chr=chr6 |cpg_percent=0.045455 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NR_001435, intron 1 of 4) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D3832838,EH38E2460384) | |ccre_description=dELS (EH38D3832838,EH38E2460384) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.045455 | |cpg_percent=0.045455 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_001435, intron 1 of 4) | ||
|distance=327 | |distance=327 | ||
|distance_to_tss=4137 | |distance_to_tss=4137 | ||
|end=33116664 | |end=33116664 | ||
|entrez_id= | |entrez_id=3116 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.565217 | |gc_percent=0.565217 | ||
|gene_alias= | |gene_alias=DP2B{{!}}DPB2{{!}}DPbeta2{{!}}HLA-DP2B | ||
|gene_description= | |gene_description=major histocompatibility complex, class II, DP beta 2 (pseudogene) | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=HLA-DPB2 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000224557 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_001435 | ||
|nearest_refseq= | |nearest_refseq=NR_001435 | ||
|nearest_unigene= | |nearest_unigene=Hs.665450 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=33116642 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 01:10, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3832838,EH38E2460384) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4137 |
|---|---|
| Nearest PromoterID: | NR_001435 |
| Entrez ID: | 3116 |
| Nearest Unigene: | Hs.665450 |
| Nearest Refseq: | NR_001435 |
| Nearest Ensembl: | ENSG00000224557 |
| Gene Name: | HLA-DPB2 |
| Gene Alias: | DP2B|DPB2|DPbeta2|HLA-DP2B |
| Gene Type: | pseudo |
| CpG%: | 0.045455 |
| GC%: | 0.565217 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |