TSS: Hg 100674.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=83 |entrez_id=152007 |gc_percent=0.781095 |gene_alias=C9orf19|GAPR-1|GAPR1 |gene_description=GLI pathogenesis related 2 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
|GAPR-1= | |||
|GAPR1= | |||
|chr=chr9 | |||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance= | |||
|distance_to_tss=83 | |distance_to_tss=83 | ||
|end=36136624 | |||
|entrez_id=152007 | |entrez_id=152007 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_022343 | |nearest_refseq=NM_022343 | ||
|nearest_unigene=Hs.493819 | |nearest_unigene=Hs.493819 | ||
|num_trans=0 | |||
|species=human | |||
|start=36136613 | |||
|strand=- | |||
|tata_box="-35(CGCCTTATAAGG,-,0.00),-33(CCTTATAAGGAG,+,0.00)" | |tata_box="-35(CGCCTTATAAGG,-,0.00),-33(CCTTATAAGGAG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_100674.1 | |tss_id=hg_100674.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:14, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 83 |
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| Nearest PromoterID: | NR_104639 |
| Entrez ID: | 152007 |
| Nearest Unigene: | Hs.493819 |
| Nearest Refseq: | NM_022343 |
| Nearest Ensembl: | ENSG00000122694 |
| Gene Name: | GLIPR2 |
| Gene Alias: | C9orf19 |
| Gene Description: | GLI pathogenesis related 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CGCCTTATAAGG,-,0.00),-33(CCTTATAAGGAG,+,0.00)" |