TSS: Rfhg 87439.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000607573.5) |ccre_category=pELS |ccre_description=pELS (EH38D3902770,EH38E2504693) |chr=chr6 |cpg_percent=0.100000 |detailed_ann...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=3' UTR (NM_003206, exon 2 of 2) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D3902770,EH38E2504693) | |ccre_description=pELS (EH38D3902770,EH38E2504693) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.100000 | |cpg_percent=0.100000 | ||
|detailed_annotation= | |detailed_annotation=3' UTR (NM_003206, exon 2 of 2) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=2739 | ||
|end=133891866 | |end=133891866 | ||
|entrez_id= | |entrez_id=6943 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.727273 | |gc_percent=0.727273 | ||
|gene_alias= | |gene_alias=POD1{{!}}bHLHa23 | ||
|gene_description= | |gene_description=transcription factor 21 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TCF21 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000118526 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_003206 | ||
|nearest_refseq= | |nearest_refseq=NM_003206 | ||
|nearest_unigene= | |nearest_unigene=Hs.78061 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=133891856 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 02:55, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D3902770,EH38E2504693) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 2739 |
|---|---|
| Nearest PromoterID: | NM_003206 |
| Entrez ID: | 6943 |
| Nearest Unigene: | Hs.78061 |
| Nearest Refseq: | NM_003206 |
| Nearest Ensembl: | ENSG00000118526 |
| Gene Name: | TCF21 |
| Gene Alias: | POD1|bHLHa23 |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.727273 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |