TSS: Rfhg 87971.1: Difference between revisions
From referenceTSS
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| Line 7: | Line 7: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-37256 | ||
|end=137905489 | |end=137905489 | ||
|entrez_id= | |entrez_id=100130476 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=lnc-TNFAIP3 | ||
|gene_description= | |gene_description=wound and keratinocyte migration associated lncRNA 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=WAKMAR2 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000237499 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_049793 | ||
|nearest_refseq= | |nearest_refseq=NR_049793 | ||
|nearest_unigene= | |nearest_unigene=Hs.598050 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=137905489 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 03:04, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3906579,EH38E2507588) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -37256 |
|---|---|
| Nearest PromoterID: | NR_049793 |
| Entrez ID: | 100130476 |
| Nearest Unigene: | Hs.598050 |
| Nearest Refseq: | NR_049793 |
| Nearest Ensembl: | ENSG00000237499 |
| Gene Name: | WAKMAR2 |
| Gene Alias: | lnc-TNFAIP3 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |