TSS: Rfhg 9072.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000340281.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2195331,EH38E1366371) |chr=chr1 |cpg_percent=0.156627 |det...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000340281.8)
|annotation=promoter-TSS (NR_002830)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2195331,EH38E1366371)
|ccre_description=PLS,CTCF-bound (EH38D2195331,EH38E1366371)
|chr=chr1
|chr=chr1
|cpg_percent=0.156627
|cpg_percent=0.156627
|detailed_annotation=protein_coding-promoter-TSS (ENST00000340281.8)
|detailed_annotation=promoter-TSS (NR_002830)
|distance=0
|distance=0
|distance_to_tss=7
|distance_to_tss=34
|end=89995186
|end=89995186
|entrez_id=ENSG00000162664
|entrez_id=284695
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.738095
|gc_percent=0.738095
|gene_alias=
|gene_alias=ZAN75{{!}}ZIRD{{!}}Zfp326{{!}}dJ871E2.1
|gene_description=
|gene_description=zinc finger protein 326
|gene_id=284695
|gene_id=284695
|gene_name=zinc finger protein 326
|gene_name=ZNF326
|gene_source=HGNC:14104
|gene_source=HGNC:14104
|gene_symbol=ZNF326
|gene_symbol=ZNF326
|gene_synonyms=FLJ20403 ZAN75 ZIRD Zfp326
|gene_synonyms=FLJ20403 ZAN75 ZIRD Zfp326
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:14104
|hgnc_mgi_id=HGNC:14104
|nearest_ensembl=
|nearest_ensembl=ENSG00000162664
|nearest_promoter_id=ENST00000370447.3
|nearest_promoter_id=NM_181781
|nearest_refseq=
|nearest_refseq=NM_181781
|nearest_unigene=ENST00000361911
|nearest_unigene=Hs.306221
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=89995102
|start=89995103
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 03:52, 25 June 2023

Basic information about the TSS

TSS ID:rfhg_9072.1
Species:human
Chr:chr1
Start:89995103
End:89995186
Strand:+
Source datasets
Protocol
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2195331,EH38E1366371)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000340281.9:0
ENST00000394583.7:0
ENST00000361911.9:0
ENST00000370447.3:0
BC052645:0
BC061521:0
BC038454:0
BC090866:0
AK000410:0
BC053888:0
BC014899:0
BC070341:0
BC013102:0
AK303707:0
AK297073:0
GeneID:284695
HGNC/MGI_ID:HGNC:14104
UniProt_ID:A0A0A0MRN4 E2QRN4 Q5BKZ1
Nearer transcript ids and distances:
    Gene_name:ZNF326
    Gene_symbol:ZNF326
    Gene_synonyms:FLJ20403 ZAN75 ZIRD Zfp326
    Gene_source:HGNC:14104



    TATA-Box annotation

    Distance to TSS:34
    Nearest PromoterID:NM_181781
    Entrez ID:284695
    Nearest Unigene:Hs.306221
    Nearest Refseq:NM_181781
    Nearest Ensembl:ENSG00000162664
    Gene Name:ZNF326
    Gene Alias:ZAN75|ZIRD|Zfp326|dJ871E2.1
    Gene Type:protein-coding
    CpG%:0.156627
    GC%:0.738095
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_9072.1&oldid=2559641"