TSS: Rfhg 91048.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000399434.2, intron 1 of 2) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3941114,EH38E2531466) |chr=chr7 |cpg_percent=0....") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3941114,EH38E2531466) | |ccre_description=pELS,CTCF-bound (EH38D3941114,EH38E2531466) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.071429 | |cpg_percent=0.071429 | ||
|detailed_annotation= | |detailed_annotation=CpG-25497 | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-1013 | ||
|end=5424573 | |end=5424573 | ||
|entrez_id= | |entrez_id=84629 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.551724 | |gc_percent=0.551724 | ||
|gene_alias= | |gene_alias=CAGL79{{!}}TNRC18A | ||
|gene_description= | |gene_description=trinucleotide repeat containing 18 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TNRC18 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000182095 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001080495 | ||
|nearest_refseq= | |nearest_refseq=NM_001013722 | ||
|nearest_unigene= | |nearest_unigene=Hs.520638 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=5424545 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 03:58, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3941114,EH38E2531466) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -1013 |
|---|---|
| Nearest PromoterID: | NM_001080495 |
| Entrez ID: | 84629 |
| Nearest Unigene: | Hs.520638 |
| Nearest Refseq: | NM_001013722 |
| Nearest Ensembl: | ENSG00000182095 |
| Gene Name: | TNRC18 |
| Gene Alias: | CAGL79|TNRC18A |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.551724 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |