TSS: Rfhg 927.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000377860.8)
|annotation=5' UTR (NM_007274, exon 1 of 9)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2121362,EH38E1314401)
|ccre_description=PLS,CTCF-bound (EH38D2121362,EH38E1314401)
|chr=chr1
|chr=chr1
|cpg_percent=0.052632
|cpg_percent=0.052632
|detailed_annotation=protein_coding-promoter-TSS (ENST00000377860.8)
|detailed_annotation=5' UTR (NM_007274, exon 1 of 9)
|distance=-43
|distance=-43
|distance_to_tss=52
|distance_to_tss=159
|end=6393617
|end=6393617
|entrez_id=ENSG00000271746
|entrez_id=11332
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.600000
|gc_percent=0.600000
|gene_alias=
|gene_alias=ACH1{{!}}ACT{{!}}BACH{{!}}CTE-II{{!}}LACH{{!}}LACH1{{!}}hBACH
|gene_description=
|gene_description=acyl-CoA thioesterase 7
|gene_id=
|gene_id=
|gene_name=
|gene_name=ACOT7
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=antisense
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=ENSG00000097021
|nearest_promoter_id=ENST00000607670.1
|nearest_promoter_id=NM_007274
|nearest_refseq=
|nearest_refseq=NM_007274
|nearest_unigene=ENST00000607670
|nearest_unigene=Hs.126137
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=6393597
|start=6393598
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 04:25, 25 June 2023

Basic information about the TSS


TSS ID:rfhg_927.1
Species:human
Chr:chr1
Start:6393598
End:6393617
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2121362,EH38E1314401)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000607670.1:-43
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:ACOT7
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:159
    Nearest PromoterID:NM_007274
    Entrez ID:11332
    Nearest Unigene:Hs.126137
    Nearest Refseq:NM_007274
    Nearest Ensembl:ENSG00000097021
    Gene Name:ACOT7
    Gene Alias:ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH
    Gene Type:protein-coding
    CpG%:0.052632
    GC%:0.600000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):