TSS: Rfhg 93599.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=pELS |ccre_description=pELS (EH38D3967951,EH38E2549681) |chr=chr7 |cpg_percent=0.028571 |detailed_annotation=Intergenic |di...") |
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|distance_to_tss=-1011 | |distance_to_tss=-1011 | ||
|end=38274676 | |end=38274676 | ||
|entrez_id= | |entrez_id=445347 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.444444 | |gc_percent=0.444444 | ||
|gene_alias= | |gene_alias=CD3G{{!}}TCRG{{!}}TCRGC1{{!}}TCRGC2{{!}}TCRGV | ||
|gene_description= | |gene_description=TCR gamma alternate reading frame protein | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TARP | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001003806 | ||
|nearest_refseq= | |nearest_refseq=NM_001003799 | ||
|nearest_unigene= | |nearest_unigene=Hs.534032 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=38274641 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 04:41, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D3967951,EH38E2549681) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1011 |
|---|---|
| Nearest PromoterID: | NM_001003806 |
| Entrez ID: | 445347 |
| Nearest Unigene: | Hs.534032 |
| Nearest Refseq: | NM_001003799 |
| Nearest Ensembl: | |
| Gene Name: | TARP |
| Gene Alias: | CD3G|TCRG|TCRGC1|TCRGC2|TCRGV |
| Gene Type: | protein-coding |
| CpG%: | 0.028571 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |