TSS: Rfhg 93623.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000444775.2, exon 1 of 2) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3967998,EH38E2549725) |chr=chr7 |cpg_percent=0.0140...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3967998,EH38E2549725) | |ccre_description=pELS,CTCF-bound (EH38D3967998,EH38E2549725) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.014085 | |cpg_percent=0.014085 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-24073 | ||
|end=38317540 | |end=38317540 | ||
|entrez_id= | |entrez_id=100506776 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.569444 | |gc_percent=0.569444 | ||
|gene_alias= | |gene_alias=TCRGV | ||
|gene_description= | |gene_description=T cell receptor gamma locus antisense RNA 1 | ||
|gene_id=445347 | |gene_id=445347 | ||
|gene_name= | |gene_name=TRG-AS1 | ||
|gene_source=EntrezGene:445347 | |gene_source=EntrezGene:445347 | ||
|gene_symbol=TARP | |gene_symbol=TARP | ||
|gene_synonyms=CD3G TCRG TCRGC1 TCRGC2 TCRGV | |gene_synonyms=CD3G TCRG TCRGC1 TCRGC2 TCRGV | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000281103 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_040085 | ||
|nearest_refseq= | |nearest_refseq=NR_040085 | ||
|nearest_unigene= | |nearest_unigene=Hs.173034 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=38317469 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 04:41, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3967998,EH38E2549725) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -24073 |
|---|---|
| Nearest PromoterID: | NR_040085 |
| Entrez ID: | 100506776 |
| Nearest Unigene: | Hs.173034 |
| Nearest Refseq: | NR_040085 |
| Nearest Ensembl: | ENSG00000281103 |
| Gene Name: | TRG-AS1 |
| Gene Alias: | TCRGV |
| Gene Type: | ncRNA |
| CpG%: | 0.014085 |
| GC%: | 0.569444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.