TSS: Hg 10074.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-323428 |entrez_id=9341 |gc_percent=0.532338 |gene_alias=CEB |gene_description=vesicle associated membrane protein 3 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr1 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |||
|distance_to_tss=-323428 | |distance_to_tss=-323428 | ||
|end=7447845 | |||
|entrez_id=9341 | |entrez_id=9341 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_004781 | |nearest_refseq=NM_004781 | ||
|nearest_unigene=Hs.66708 | |nearest_unigene=Hs.66708 | ||
|num_trans=0 | |||
|species=human | |||
|start=7447837 | |||
|strand=- | |||
|tata_box="-34(CACTATAAAAAG,-,0.00)" | |tata_box="-34(CACTATAAAAAG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_10074.1 | |tss_id=hg_10074.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:13, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -323428 |
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| Nearest PromoterID: | NM_004781 |
| Entrez ID: | 9341 |
| Nearest Unigene: | Hs.66708 |
| Nearest Refseq: | NM_004781 |
| Nearest Ensembl: | ENSG00000049245 |
| Gene Name: | VAMP3 |
| Gene Alias: | CEB |
| Gene Description: | vesicle associated membrane protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(CACTATAAAAAG,-,0.00)" |