TSS: Rfhg 98022.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000333432.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4010313,EH38E2577339) |chr=chr7 |cpg_percent=0.000000 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_032959) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4010313,EH38E2577339) | |ccre_description=PLS,CTCF-bound (EH38D4010313,EH38E2577339) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_032959) | ||
|distance=37 | |distance=37 | ||
|distance_to_tss=- | |distance_to_tss=-31 | ||
|end=102671766 | |end=102671766 | ||
|entrez_id= | |entrez_id=246721 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=HRPB11B{{!}}POLR2J3{{!}}RPB11b1{{!}}RPB11b2 | ||
|gene_description= | |gene_description=RNA polymerase II subunit J2 | ||
|gene_id=246721 | |gene_id=246721 | ||
|gene_name= | |gene_name=POLR2J2 | ||
|gene_source=HGNC:23208 | |gene_source=HGNC:23208 | ||
|gene_symbol=POLR2J2 | |gene_symbol=POLR2J2 | ||
|gene_synonyms=RPB11b1 | |gene_synonyms=RPB11b1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23208 | |hgnc_mgi_id=HGNC:23208 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000267645 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_032959 | ||
|nearest_refseq= | |nearest_refseq=NM_032958 | ||
|nearest_unigene= | |nearest_unigene=Hs.610255 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=102671766 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 05:56, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4010313,EH38E2577339) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -31 |
|---|---|
| Nearest PromoterID: | NM_032959 |
| Entrez ID: | 246721 |
| Nearest Unigene: | Hs.610255 |
| Nearest Refseq: | NM_032958 |
| Nearest Ensembl: | ENSG00000267645 |
| Gene Name: | POLR2J2 |
| Gene Alias: | HRPB11B|POLR2J3|RPB11b1|RPB11b2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.