TSS: Hg 100778.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=83 |entrez_id=253650 |gc_percent=0.666667 |gene_alias=- |gene_description=ankyrin repeat domain 18A |gene_name=ANKRD18A |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000399703.5:-40 uc004abg.5:-40 BC056266:-40 NM_147195:171 uc064tec.1:171 BC152434:224 AB095935:226 KJ900500:238 AB385522:247 | |||
|chr=chr9 | |||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=-40 | |||
|distance_to_tss=83 | |distance_to_tss=83 | ||
|end=38620620 | |||
|entrez_id=253650 | |entrez_id=253650 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ankyrin repeat domain 18A | |gene_description=ankyrin repeat domain 18A | ||
|gene_name=ANKRD18A | |gene_id=253650 | ||
|gene_name=ankyrin repeat domain 18A | |||
|gene_source=HGNC:23643 | |||
|gene_symbol=ANKRD18A | |||
|gene_synonyms=FLJ35740 KIAA2015 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23643 | |||
|nearest_ensembl=ENSG00000180071 | |nearest_ensembl=ENSG00000180071 | ||
|nearest_promoter_id=NM_147195 | |nearest_promoter_id=NM_147195 | ||
|nearest_refseq=NM_147195 | |nearest_refseq=NM_147195 | ||
|nearest_unigene=Hs.644630 | |nearest_unigene=Hs.644630 | ||
|num_trans=9 | |||
|species=human | |||
|start=38620533 | |||
|strand=- | |||
|transcript_name=ENST00000399703.5 uc004abg.5 BC056266 | |||
|tss_classification=yes | |||
|tss_id=hg_100778.1 | |tss_id=hg_100778.1 | ||
|tss_score=1 | |||
|uniprot_id=Q8IVF6 | |||
}} | }} | ||
Revision as of 18:15, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 83 |
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| Nearest PromoterID: | NM_147195 |
| Entrez ID: | 253650 |
| Nearest Unigene: | Hs.644630 |
| Nearest Refseq: | NM_147195 |
| Nearest Ensembl: | ENSG00000180071 |
| Gene Name: | ankyrin repeat domain 18A |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat domain 18A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.