TSS: Hg 100781.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=99044 |entrez_id=158228 |gc_percent=0.502488 |gene_alias=C9orf122 |gene_description=family with sequence similarity 201 member...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |||
|distance_to_tss=99044 | |distance_to_tss=99044 | ||
|end=38720134 | |||
|entrez_id=158228 | |entrez_id=158228 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
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|nearest_refseq=NR_027294 | |nearest_refseq=NR_027294 | ||
|nearest_unigene=Hs.632652 | |nearest_unigene=Hs.632652 | ||
|num_trans=0 | |||
|species=human | |||
|start=38720129 | |||
|strand=- | |||
|tata_box="-32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00)" | |tata_box="-32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100781.1 | |tss_id=hg_100781.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 18:15, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 99044 |
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Nearest PromoterID: | NR_027294 |
Entrez ID: | 158228 |
Nearest Unigene: | Hs.632652 |
Nearest Refseq: | NR_027294 |
Nearest Ensembl: | |
Gene Name: | FAM201A |
Gene Alias: | C9orf122 |
Gene Description: | family with sequence similarity 201 member A |
Gene Type: | ncRNA |
CpG%: | 0.015 |
GC%: | 0.502488 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00)" |