TSS: Rfhg 99350.1: Difference between revisions
From referenceTSS
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| Line 7: | Line 7: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance=177 | |distance=177 | ||
|distance_to_tss=- | |distance_to_tss=-119947 | ||
|end=121516316 | |end=121516316 | ||
|entrez_id= | |entrez_id=10447 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=GS3786{{!}}ILEI | ||
|gene_description= | |gene_description=family with sequence similarity 3 member C | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=FAM3C | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000196937 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001040020 | ||
|nearest_refseq= | |nearest_refseq=NM_014888 | ||
|nearest_unigene= | |nearest_unigene=Hs.434053 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=121516314 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 06:19, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D4024219,EH38E2586219) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -119947 |
|---|---|
| Nearest PromoterID: | NM_001040020 |
| Entrez ID: | 10447 |
| Nearest Unigene: | Hs.434053 |
| Nearest Refseq: | NM_014888 |
| Nearest Ensembl: | ENSG00000196937 |
| Gene Name: | FAM3C |
| Gene Alias: | GS3786|ILEI |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |