TSS: Rfmm 100138.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000219109.2, intron 3 of 10) |ccre_category=dELS |ccre_description=dELS (EM10D1190782,EM10E0488888) |chr=chr10 |cpg_percent=0.000000...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (XM_006513548.5) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EM10D1190782,EM10E0488888) | |ccre_description=dELS (EM10D1190782,EM10E0488888) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (XM_006513548.5) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=230 | ||
|end=116767772 | |end=116767772 | ||
|entrez_id= | |entrez_id=Rab3ip | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.437500 | |gc_percent=0.437500 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=Rab3ip | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_017313908.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001003950 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=116767757 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 08:31, 25 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS (EM10D1190782,EM10E0488888) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 230 |
|---|---|
| Nearest PromoterID: | XM_017313908.2 |
| Entrez ID: | Rab3ip |
| Nearest Unigene: | NM_001003950 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Rab3ip |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.437500 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |