TSS: Hg 100800.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-1019 |entrez_id=101927015 |gc_percent=0.447761 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1506 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=-1019 | |distance_to_tss=-1019 | ||
|end=68547635 | |||
|entrez_id=101927015 | |entrez_id=101927015 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_109769 | |nearest_refseq=NR_109769 | ||
|nearest_unigene=Hs.406454 | |nearest_unigene=Hs.406454 | ||
|num_trans=0 | |||
|species=human | |||
|start=68547606 | |||
|strand=- | |||
|tata_box="-90(GAGTATTAAAAC,-,0.00)" | |tata_box="-90(GAGTATTAAAAC,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100800.1 | |tss_id=hg_100800.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:16, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1019 |
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| Nearest PromoterID: | NR_109769 |
| Entrez ID: | 101927015 |
| Nearest Unigene: | Hs.406454 |
| Nearest Refseq: | NR_109769 |
| Nearest Ensembl: | ENSG00000234506 |
| Gene Name: | LINC01506 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1506 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-90(GAGTATTAAAAC,-,0.00)" |