TSS: Hg 100837.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=22 |entrez_id=100507299 |gc_percent=0.646766 |gene_alias=MAMDC2-AS2 |gene_description=SMC5 antisense RNA 1 (head to head) |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000594708.1:0 NR_039990:0 uc004ahq.2:0 AK124136:0 CR936772:0 BC040840:0 | |||
|chr=chr9 | |||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |||
|distance_to_tss=22 | |distance_to_tss=22 | ||
|end=70258885 | |||
|entrez_id=100507299 | |entrez_id=100507299 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=MAMDC2-AS2 | |gene_alias=MAMDC2-AS2 | ||
|gene_description=SMC5 antisense RNA 1 (head to head) | |gene_description=SMC5 antisense RNA 1 (head to head) | ||
|gene_name=SMC5-AS1 | |gene_id=100507299 | ||
|gene_name=SMC5 antisense RNA 1 (head to head) | |||
|gene_source=HGNC:48718 | |||
|gene_symbol=SMC5-AS1 | |||
|gene_synonyms=MAMDC2-AS2 | |||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48718 | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_039990 | |nearest_promoter_id=NR_039990 | ||
|nearest_refseq=NR_039990 | |nearest_refseq=NR_039990 | ||
|nearest_unigene=Hs.556816 | |nearest_unigene=Hs.556816 | ||
|num_trans=6 | |||
|species=human | |||
|start=70258819 | |||
|strand=- | |||
|transcript_name=ENST00000594708.1 NR_039990 uc004ahq.2 AK124136 CR936772 BC040840 | |||
|tss_classification=yes | |||
|tss_id=hg_100837.1 | |tss_id=hg_100837.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 18:17, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 22 |
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| Nearest PromoterID: | NR_039990 |
| Entrez ID: | 100507299 |
| Nearest Unigene: | Hs.556816 |
| Nearest Refseq: | NR_039990 |
| Nearest Ensembl: | |
| Gene Name: | SMC5 antisense RNA 1 (head to head) |
| Gene Alias: | MAMDC2-AS2 |
| Gene Description: | SMC5 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.