TSS: Hg 100838.1: Difference between revisions
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(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=334 |entrez_id=23137 |gc_percent=0.681592 |gene_alias=SMC5L1 |gene_description=structural maintenance of chromosomes 5 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=NR_039990:416 BC040840:416 ENST00000594708.1:424 uc004ahq.2:424 AK124136:424 CR936772:432 | |||
|chr=chr9 | |||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=416 | |||
|distance_to_tss=334 | |distance_to_tss=334 | ||
|end=70259303 | |||
|entrez_id=23137 | |entrez_id=23137 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=SMC5L1 | |gene_alias=SMC5L1 | ||
|gene_description=structural maintenance of chromosomes 5 | |gene_description=structural maintenance of chromosomes 5 | ||
|gene_name=SMC5 | |gene_id=100507299 | ||
|gene_name=SMC5 antisense RNA 1 (head to head) | |||
|gene_source=HGNC:48718 | |||
|gene_symbol=SMC5-AS1 | |||
|gene_synonyms=MAMDC2-AS2 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:48718 | |||
|nearest_ensembl=ENSG00000198887 | |nearest_ensembl=ENSG00000198887 | ||
|nearest_promoter_id=NM_015110 | |nearest_promoter_id=NM_015110 | ||
|nearest_refseq=NM_015110 | |nearest_refseq=NM_015110 | ||
|nearest_unigene=Hs.534189 | |nearest_unigene=Hs.534189 | ||
|num_trans=6 | |||
|species=human | |||
|start=70259289 | |||
|strand=- | |||
|transcript_name=NR_039990 BC040840 | |||
|tss_classification=yes | |||
|tss_id=hg_100838.1 | |tss_id=hg_100838.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 18:17, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 334 |
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| Nearest PromoterID: | NM_015110 |
| Entrez ID: | 23137 |
| Nearest Unigene: | Hs.534189 |
| Nearest Refseq: | NM_015110 |
| Nearest Ensembl: | ENSG00000198887 |
| Gene Name: | SMC5 antisense RNA 1 (head to head) |
| Gene Alias: | SMC5L1 |
| Gene Description: | structural maintenance of chromosomes 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.