TSS: Hg 100858.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=-4483 |entrez_id=687 |gc_percent=0.721393 |gene_alias=BTEB|BTEB1 |gene_description=Kruppel like factor 9 |gene_name=KLF9 |gene_t...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BTEB1= | |||
|chr=chr9 | |||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance= | |||
|distance_to_tss=-4483 | |distance_to_tss=-4483 | ||
|end=70419143 | |||
|entrez_id=687 | |entrez_id=687 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_001206 | |nearest_refseq=NM_001206 | ||
|nearest_unigene=Hs.150557 | |nearest_unigene=Hs.150557 | ||
|num_trans=0 | |||
|species=human | |||
|start=70419136 | |||
|strand=- | |||
|tata_box="-32(CTTTTTAAAAGG,+,0.00),-32(CTTTTTAAAAGG,-,0.00),-31(TTTTTAAAAGGG,+,0.00)" | |tata_box="-32(CTTTTTAAAAGG,+,0.00),-32(CTTTTTAAAAGG,-,0.00),-31(TTTTTAAAAGGG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_100858.1 | |tss_id=hg_100858.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:18, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -4483 |
|---|---|
| Nearest PromoterID: | NM_001206 |
| Entrez ID: | 687 |
| Nearest Unigene: | Hs.150557 |
| Nearest Refseq: | NM_001206 |
| Nearest Ensembl: | ENSG00000119138 |
| Gene Name: | KLF9 |
| Gene Alias: | BTEB |
| Gene Description: | Kruppel like factor 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CTTTTTAAAAGG,+,0.00),-32(CTTTTTAAAAGG,-,0.00),-31(TTTTTAAAAGGG,+,0.00)" |