TSS: Hg 100874.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=16965 |entrez_id=406987 |gc_percent=0.353234 |gene_alias=MIRN204|RDICC|miRNA204|mir-204 |gene_description=microRNA 204 |gene_na...") |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RDICC= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |||
|distance_to_tss=16965 | |distance_to_tss=16965 | ||
|end=70793124 | |||
|entrez_id=406987 | |entrez_id=406987 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
Line 8: | Line 12: | ||
|gene_name=MIR204 | |gene_name=MIR204 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|miRNA204= | |||
|mir-204= | |||
|nearest_ensembl=ENSG00000207935 | |nearest_ensembl=ENSG00000207935 | ||
|nearest_promoter_id=NR_029621 | |nearest_promoter_id=NR_029621 | ||
|nearest_refseq=NR_029621 | |nearest_refseq=NR_029621 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |||
|species=human | |||
|start=70793114 | |||
|strand=- | |||
|tata_box="-57(AACCATAAATGG,-,0.00),-42(TTCTTTATAAGG,-,0.00),-40(CTTTATAAGGAG,+,0.00)" | |tata_box="-57(AACCATAAATGG,-,0.00),-42(TTCTTTATAAGG,-,0.00),-40(CTTTATAAGGAG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100874.1 | |tss_id=hg_100874.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 18:19, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 16965 |
---|---|
Nearest PromoterID: | NR_029621 |
Entrez ID: | 406987 |
Nearest Unigene: | |
Nearest Refseq: | NR_029621 |
Nearest Ensembl: | ENSG00000207935 |
Gene Name: | MIR204 |
Gene Alias: | MIRN204 |
Gene Description: | microRNA 204 |
Gene Type: | ncRNA |
CpG%: | 0.005 |
GC%: | 0.353234 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-57(AACCATAAATGG,-,0.00),-42(TTCTTTATAAGG,-,0.00),-40(CTTTATAAGGAG,+,0.00)" |