TSS: Rfmm 116820.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000044380.8) |ccre_category=pELS |ccre_description=pELS (EM10D2405122,EM10E0993293) |chr=chr12 |cpg_percent=0.105263 |detailed...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_008259.4) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EM10D2405122,EM10E0993293) | |ccre_description=pELS (EM10D2405122,EM10E0993293) | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.105263 | |cpg_percent=0.105263 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_008259.4) | ||
|distance=-116 | |distance=-116 | ||
|distance_to_tss=- | |distance_to_tss=-21 | ||
|end=57593290 | |end=57593290 | ||
|entrez_id= | |entrez_id=Foxa1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.589744 | |gc_percent=0.589744 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=Foxa1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_030246562.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_006515481 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=57593252 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 12:47, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS (EM10D2405122,EM10E0993293) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | XM_030246562.2 |
| Entrez ID: | Foxa1 |
| Nearest Unigene: | XM_006515481 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Foxa1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.105263 |
| GC%: | 0.589744 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |