TSS: Hg 101007.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=286038 |entrez_id=301 |gc_percent=0.303483 |gene_alias=ANX1|LPC1 |gene_description=annexin A1 |gene_name=ANXA1 |gene_type=protein-c...") |
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{{TSSDetail | {{TSSDetail | ||
|LPC1= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=286038 | |distance_to_tss=286038 | ||
|end=73437785 | |||
|entrez_id=301 | |entrez_id=301 | ||
|gc_percent=0.303483 | |gc_percent=0.303483 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_000700 | |nearest_refseq=NM_000700 | ||
|nearest_unigene=Hs.494173 | |nearest_unigene=Hs.494173 | ||
|num_trans=0 | |||
|species=human | |||
|start=73437752 | |||
|strand=- | |||
|tata_box="-20(TCTTTTTAAAGG,-,0.00),-19(CTTTTTAAAGGA,+,0.00)" | |tata_box="-20(TCTTTTTAAAGG,-,0.00),-19(CTTTTTAAAGGA,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101007.1 | |tss_id=hg_101007.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:24, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 286038 |
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| Nearest PromoterID: | NM_000700 |
| Entrez ID: | 301 |
| Nearest Unigene: | Hs.494173 |
| Nearest Refseq: | NM_000700 |
| Nearest Ensembl: | ENSG00000135046 |
| Gene Name: | ANXA1 |
| Gene Alias: | ANX1 |
| Gene Description: | annexin A1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.303483 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-20(TCTTTTTAAAGG,-,0.00),-19(CTTTTTAAAGGA,+,0.00)" |