TSS: Hg 10101.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-2080 |entrez_id=102724539 |gc_percent=0.502488 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1714 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000364105.1:-2 uc057byp.1:-2 | |||
|chr=chr1 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-2 | |||
|distance_to_tss=-2080 | |distance_to_tss=-2080 | ||
|end=8206595 | |||
|entrez_id=102724539 | |entrez_id=102724539 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1714 | |gene_description=long intergenic non-protein coding RNA 1714 | ||
|gene_name= | |gene_id= | ||
|gene_name="RNA, U1 small nuclear 27, pseudogene" | |||
|gene_source=HGNC:37497 | |||
|gene_symbol=RNU1-27P | |||
|gene_synonyms= | |||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:37497 | |||
|nearest_ensembl=ENSG00000227634 | |nearest_ensembl=ENSG00000227634 | ||
|nearest_promoter_id=NR_125998 | |nearest_promoter_id=NR_125998 | ||
|nearest_refseq=NR_125998 | |nearest_refseq=NR_125998 | ||
|nearest_unigene=Hs.516816 | |nearest_unigene=Hs.516816 | ||
|num_trans=2 | |||
|species=human | |||
|start=8206588 | |||
|strand=- | |||
|transcript_name=ENST00000364105.1 uc057byp.1 | |||
|tss_classification=no | |||
|tss_id=hg_10101.1 | |tss_id=hg_10101.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2080 |
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| Nearest PromoterID: | NR_125998 |
| Entrez ID: | 102724539 |
| Nearest Unigene: | Hs.516816 |
| Nearest Refseq: | NR_125998 |
| Nearest Ensembl: | ENSG00000227634 |
| Gene Name: | "RNA, U1 small nuclear 27, pseudogene" |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1714 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.