TSS: Hg 101023.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=281 |entrez_id=55071 |gc_percent=0.716418 |gene_alias=- |gene_description=chromosome 9 open reading frame 40 |gene_name=C9orf40...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ894122:-3 BC039588:-211 AK225349:-241 ENST00000376854.5:-277 NM_017998:-277 uc004ajo.5:-277 AK000972:-277 | |||
|chr=chr9 | |||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=-3 | |||
|distance_to_tss=281 | |distance_to_tss=281 | ||
|end=74952609 | |||
|entrez_id=55071 | |entrez_id=55071 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_017998 | |nearest_refseq=NM_017998 | ||
|nearest_unigene=Hs.532296 | |nearest_unigene=Hs.532296 | ||
|num_trans=7 | |||
|species=human | |||
|start=74952600 | |||
|strand=- | |||
|transcript_name=KJ894122 | |||
|tss_classification=yes | |||
|tss_id=hg_101023.1 | |tss_id=hg_101023.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 281 |
|---|---|
| Nearest PromoterID: | NM_017998 |
| Entrez ID: | 55071 |
| Nearest Unigene: | Hs.532296 |
| Nearest Refseq: | NM_017998 |
| Nearest Ensembl: | ENSG00000135045 |
| Gene Name: | C9orf40 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 40 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |