TSS: Hg 101042.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=27801 |entrez_id=2650 |gc_percent=0.487562 |gene_alias=C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 |gene_description="glucosaminyl (...") |
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{{TSSDetail | {{TSSDetail | ||
|C2GNT-L= | |||
|C2GNT1= | |||
|G6NT= | |||
|NACGT2= | |||
|NAGCT2= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=27801 | |distance_to_tss=27801 | ||
|end=76528435 | |||
|entrez_id=2650 | |entrez_id=2650 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
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|nearest_refseq=NM_001490 | |nearest_refseq=NM_001490 | ||
|nearest_unigene=Hs.521568 | |nearest_unigene=Hs.521568 | ||
|num_trans=0 | |||
|species=human | |||
|start=76528432 | |||
|strand=- | |||
|tata_box="-43(GGCCAGATAAGG,-,0.00)" | |tata_box="-43(GGCCAGATAAGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101042.1 | |tss_id=hg_101042.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:26, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 27801 |
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| Nearest PromoterID: | NM_001097636 |
| Entrez ID: | 2650 |
| Nearest Unigene: | Hs.521568 |
| Nearest Refseq: | NM_001490 |
| Nearest Ensembl: | ENSG00000187210 |
| Gene Name: | GCNT1 |
| Gene Alias: | C2GNT |
| Gene Description: | "glucosaminyl (N-acetyl) transferase 1, core 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-43(GGCCAGATAAGG,-,0.00)" |