TSS: Rfmm 139215.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000229755.2, intron 1 of 17) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EM10D2512899,EM10E1035649) |chr=chr15 |cpg_perce...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (XM_030248748.1, intron 1 of 19) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EM10D2512899,EM10E1035649) | |ccre_description=pELS,CTCF-bound (EM10D2512899,EM10E1035649) | ||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.038462 | |cpg_percent=0.038462 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_027081.3, intron 1 of 19) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=317 | ||
|end=89080367 | |end=89080367 | ||
|entrez_id= | |entrez_id=Dennd6b | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.703704 | |gc_percent=0.703704 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100038701 | |gene_id=100038701 | ||
|gene_name= | |gene_name=Dennd6b | ||
|gene_source=MGI:3697819 | |gene_source=MGI:3697819 | ||
|gene_symbol=5730424H11Rik | |gene_symbol=5730424H11Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3697819 | |hgnc_mgi_id=MGI:3697819 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_030248744.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XM_030248744 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=89080341 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 18:24, 25 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2512899,EM10E1035649) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 317 |
|---|---|
| Nearest PromoterID: | XM_030248744.2 |
| Entrez ID: | Dennd6b |
| Nearest Unigene: | XM_030248744 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Dennd6b |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.038462 |
| GC%: | 0.703704 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.