TSS: Rfmm 139294.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000023291.6) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EM10D2513051,EM10E1035730) |chr=chr15 |cpg_percent=0.064516...")
 
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000023291.6)
|annotation=promoter-TSS (NM_021921.3)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EM10D2513051,EM10E1035730)
|ccre_description=PLS,CTCF-bound (EM10D2513051,EM10E1035730)
|chr=chr15
|chr=chr15
|cpg_percent=0.064516
|cpg_percent=0.064516
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000023291.6)
|detailed_annotation=-promoter-TSS (NM_021921.3)
|distance=150
|distance=150
|distance_to_tss=-183
|distance_to_tss=-181
|end=89337964
|end=89337964
|entrez_id=ENSMUSG00000022619
|entrez_id=Mapk8ip2
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.650794
|gc_percent=0.650794
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=
|gene_id=
|gene_name=
|gene_name=Mapk8ip2
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000023291.6
|nearest_promoter_id=NM_021921.3
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000023291
|nearest_unigene=NM_021921
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=89337901
|start=89337902
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 18:25, 25 June 2023

Basic information about the TSS


TSS ID:rfmm_139294.1
Species:mouse
Chr:chr15
Start:89337902
End:89337964
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2513051,EM10E1035730)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_021921.3:150
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Mapk8ip2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-181
    Nearest PromoterID:NM_021921.3
    Entrez ID:Mapk8ip2
    Nearest Unigene:NM_021921
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Mapk8ip2
    Gene Alias:
    Gene Type:
    CpG%:0.064516
    GC%:0.650794
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):