TSS: Hg 101234.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=128692 |entrez_id=401535 |gc_percent=0.457711 |gene_alias=- |gene_description=chromosome 9 open reading frame 170 |gene_name=C9...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |||
|distance_to_tss=128692 | |distance_to_tss=128692 | ||
|end=87277341 | |||
|entrez_id=401535 | |entrez_id=401535 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_001001709 | |nearest_refseq=NM_001001709 | ||
|nearest_unigene=Hs.657740 | |nearest_unigene=Hs.657740 | ||
|num_trans=0 | |||
|species=human | |||
|start=87277330 | |||
|strand=- | |||
|tata_box="-93(CCTTAAATGAGC,+,0.00)" | |tata_box="-93(CCTTAAATGAGC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101234.1 | |tss_id=hg_101234.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:34, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 128692 |
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| Nearest PromoterID: | NM_001001709 |
| Entrez ID: | 401535 |
| Nearest Unigene: | Hs.657740 |
| Nearest Refseq: | NM_001001709 |
| Nearest Ensembl: | |
| Gene Name: | C9orf170 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 170 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-93(CCTTAAATGAGC,+,0.00)" |