TSS: Rfmm 149573.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000024817.15) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EM10D2554396,EM10E1053265) |chr=chr17 |cpg_percent=0.113475...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000024817.15)
|annotation=promoter-TSS (NM_021419.2)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EM10D2554396,EM10E1053265)
|ccre_description=PLS,CTCF-bound (EM10D2554396,EM10E1053265)
|chr=chr17
|chr=chr17
|cpg_percent=0.113475
|cpg_percent=0.113475
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000024817.15)
|detailed_annotation=-promoter-TSS (NM_021419.2)
|distance=0
|distance=0
|distance_to_tss=3
|distance_to_tss=68
|end=29833902
|end=29833902
|entrez_id=ENSMUSG00000090083
|entrez_id=Rnf8
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.669014
|gc_percent=0.669014
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=106014251 58230
|gene_id=106014251 58230
|gene_name=predicted gene, 28043; ring finger protein 8
|gene_name=Rnf8
|gene_source=MGI:1929069 MGI:5547779
|gene_source=MGI:1929069 MGI:5547779
|gene_symbol=Gm28043 Rnf8
|gene_symbol=Gm28043 Rnf8
|gene_synonyms=3830404E21Rik AIP37
|gene_synonyms=3830404E21Rik AIP37
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=MGI:1929069 MGI:5547779
|hgnc_mgi_id=MGI:1929069 MGI:5547779
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000172485.8
|nearest_promoter_id=NM_021419.2
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000162417
|nearest_unigene=NM_021419
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=29833760
|start=29833761
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 21:02, 25 June 2023

Basic information about the TSS

TSS ID:rfmm_149573.1
TSS ID(Version3):mm_137788.1
mm_137787.1
mm_137789.1
Species:mouse
Chr:chr17
Start:29833761
End:29833902
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2554396,EM10E1053265)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000024817.15:0
ENSMUST00000162588.3:0
ENSMUST00000172485.8:0
ENSMUST00000234498.2:0
ENSMUST00000130871.2:0
ENSMUST00000161952.2:0
AK147168:0
BC021778:0
AK076180:0
AK172991:0
GeneID:106014251 58230
HGNC/MGI_ID:MGI:1929069 MGI:5547779
UniProt_ID:A0A3Q4EGU3 E0CXC2 E0CY08 G3UZZ4 Q6A027 Q8VC56
Nearer transcript ids and distances:
    Gene_name:Rnf8
    Gene_symbol:Gm28043 Rnf8
    Gene_synonyms:3830404E21Rik AIP37
    Gene_source:MGI:1929069 MGI:5547779



    TATA-Box annotation

    Distance to TSS:68
    Nearest PromoterID:NM_021419.2
    Entrez ID:Rnf8
    Nearest Unigene:NM_021419
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Rnf8
    Gene Alias:
    Gene Type:
    CpG%:0.113475
    GC%:0.669014
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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