TSS: Hg 101358.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=109735 |entrez_id=100129316 |gc_percent=0.467662 |gene_alias=- |gene_description=uncharacterized LOC100129316 |gene_name=LOC100...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000427745.1:0 uc064ufo.1:0 | |||
|chr=chr9 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |||
|distance_to_tss=109735 | |distance_to_tss=109735 | ||
|end=90965402 | |||
|entrez_id=100129316 | |entrez_id=100129316 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_033912 | |nearest_refseq=NR_033912 | ||
|nearest_unigene=Hs.458154 | |nearest_unigene=Hs.458154 | ||
|num_trans=2 | |||
|species=human | |||
|start=90965391 | |||
|strand=- | |||
|tata_box="-99(TTCCTTAAAAGG,-,0.00),-97(CCTTAAAAGGAA,+,0.00)" | |tata_box="-99(TTCCTTAAAAGG,-,0.00),-97(CCTTAAAAGGAA,+,0.00)" | ||
|transcript_name=ENST00000427745.1 uc064ufo.1 | |||
|tss_classification=no | |||
|tss_id=hg_101358.1 | |tss_id=hg_101358.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:40, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 109735 |
|---|---|
| Nearest PromoterID: | NR_033912 |
| Entrez ID: | 100129316 |
| Nearest Unigene: | Hs.458154 |
| Nearest Refseq: | NR_033912 |
| Nearest Ensembl: | |
| Gene Name: | LOC100129316 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100129316 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-99(TTCCTTAAAAGG,-,0.00),-97(CCTTAAAAGGAA,+,0.00)" |