TSS: Hg 101361.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-10331 |entrez_id=100129316 |gc_percent=0.437811 |gene_alias=- |gene_description=uncharacterized LOC100129316 |gene_name=LOC1001...") |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=-10331 | |distance_to_tss=-10331 | ||
|end=91085466 | |||
|entrez_id=100129316 | |entrez_id=100129316 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
Line 12: | Line 15: | ||
|nearest_refseq=NR_033912 | |nearest_refseq=NR_033912 | ||
|nearest_unigene=Hs.458154 | |nearest_unigene=Hs.458154 | ||
|num_trans=0 | |||
|species=human | |||
|start=91085460 | |||
|strand=- | |||
|tata_box="-33(GCCCTTAAAAAC,-,0.00),-32(CCCTTAAAAACC,+,0.00),-31(CCTTAAAAACCG,+,0.00)" | |tata_box="-33(GCCCTTAAAAAC,-,0.00),-32(CCCTTAAAAACC,+,0.00),-31(CCTTAAAAACCG,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101361.1 | |tss_id=hg_101361.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 18:40, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -10331 |
---|---|
Nearest PromoterID: | NR_033912 |
Entrez ID: | 100129316 |
Nearest Unigene: | Hs.458154 |
Nearest Refseq: | NR_033912 |
Nearest Ensembl: | |
Gene Name: | LOC100129316 |
Gene Alias: | - |
Gene Description: | uncharacterized LOC100129316 |
Gene Type: | ncRNA |
CpG%: | 0.01 |
GC%: | 0.437811 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCCCTTAAAAAC,-,0.00),-32(CCCTTAAAAACC,+,0.00),-31(CCTTAAAAACCG,+,0.00)" |