TSS: Hg 101500.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=494 |entrez_id=158293 |gc_percent=0.452736 |gene_alias=C9orf10OS |gene_description=family with sequence similarity 120A opposit...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=DQ599685:-9 AK309269:-36 ENST00000483149.6:-139 ENST00000520470.5:-139 uc004att.5:-139 uc004ats.5:-139 BC107135:-139 BC107136:-139 BC113074:-139 BC160143:369 DQ579422:398 ENST00000375412.9:-474 NM_198841:-474 uc004atu.5:-474 AK056096:-474 | |||
|chr=chr9 | |||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-9 | |||
|distance_to_tss=494 | |distance_to_tss=494 | ||
|end=93453118 | |||
|entrez_id=158293 | |entrez_id=158293 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
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|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
|num_trans=15 | |||
|species=human | |||
|start=93453077 | |||
|strand=- | |||
|transcript_name=DQ599685 | |||
|tss_classification=yes | |||
|tss_id=hg_101500.1 | |tss_id=hg_101500.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:46, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 494 |
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| Nearest PromoterID: | NR_136230 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | FAM120AOS |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |