TSS: Hg 101512.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=-158 |entrez_id=101928099 |gc_percent=0.532338 |gene_alias=PCAN-R2 |gene_description=prostate cancer associated transcript 7 (n...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance= | |||
|distance_to_tss=-158 | |distance_to_tss=-158 | ||
|end=94554892 | |||
|entrez_id=101928099 | |entrez_id=101928099 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_121566 | |nearest_refseq=NR_121566 | ||
|nearest_unigene=Hs.674409 | |nearest_unigene=Hs.674409 | ||
|num_trans=0 | |||
|species=human | |||
|start=94554882 | |||
|strand=- | |||
|tata_box="-36(CAGTATATAAAG,-,0.00)" | |tata_box="-36(CAGTATATAAAG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_101512.1 | |tss_id=hg_101512.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:46, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -158 |
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| Nearest PromoterID: | NR_121569 |
| Entrez ID: | 101928099 |
| Nearest Unigene: | Hs.674409 |
| Nearest Refseq: | NR_121566 |
| Nearest Ensembl: | ENSG00000231806 |
| Gene Name: | PCAT7 |
| Gene Alias: | PCAN-R2 |
| Gene Description: | prostate cancer associated transcript 7 (non-protein coding) |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(CAGTATATAAAG,-,0.00)" |