TSS: Hg 101538.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-57863 |entrez_id=100422842 |gc_percent=0.39801 |gene_alias=mir-3074 |gene_description=microRNA 3074 |gene_name=MIR3074 |gene_type=...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=-57863 | |distance_to_tss=-57863 | ||
|end=95143963 | |||
|entrez_id=100422842 | |entrez_id=100422842 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_036109 | |nearest_refseq=NR_036109 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |||
|species=human | |||
|start=95143951 | |||
|strand=- | |||
|tata_box="15(TCTTTTAAACAG,+,0.00),38(CCCTCTTTATGG,-,0.00)" | |tata_box="15(TCTTTTAAACAG,+,0.00),38(CCCTCTTTATGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101538.1 | |tss_id=hg_101538.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:47, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -57863 |
|---|---|
| Nearest PromoterID: | NR_036109 |
| Entrez ID: | 100422842 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_036109 |
| Nearest Ensembl: | ENSG00000207617 |
| Gene Name: | MIR3074 |
| Gene Alias: | mir-3074 |
| Gene Description: | microRNA 3074 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "15(TCTTTTAAACAG,+,0.00),38(CCCTCTTTATGG,-,0.00)" |