TSS: Hg 101570.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=-647 |entrez_id=5727 |gc_percent=0.587065 |gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 |gene_description=patched 1 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
|HPE7= | |||
|NBCCS= | |||
|PTC= | |||
|PTC1= | |||
|PTCH= | |||
|PTCH11= | |||
|chr=chr9 | |||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance= | |||
|distance_to_tss=-647 | |distance_to_tss=-647 | ||
|end=95509214 | |||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
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|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
|num_trans=0 | |||
|species=human | |||
|start=95509178 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101570.1 | |tss_id=hg_101570.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:49, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -647 |
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| Nearest PromoterID: | NM_000264 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |